Microbial Phylogeny and Evolution: Concepts and Controversies
The birth of bacterial genomics since the mid-1990s brought withit several conceptual modifications and wholly new controversies. Working beyond the scope of the neo-Darwinian evolutionary synthesis, a group of leading microbial evolutionists addresses the following and related issues, often with markedly varied viewpoints: · Did the eukaryotic nucleus, cytoskeleton and cilia also orginate from symbiosis? · Do the current scenarios about he origin of mitochondria and plastids require revision? · What is the extent of lateral gene transfer (between "species") among bacteria? · Does the rDNA phylogenetic tree still stand in the age of genomics? · Is the course of the first 3 billion years of evolution even knowable?
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2 The LargeScale Structure of the Tree of Life
3 The Molecular Phylogeny of Bacteria Based on Conserved Genes
4 Evolving Biological Organization
5 If the Tree of Life Fell Would It Make a Sound?
6 Woe Is the Tree of Life
7 The Robustness of Intermediary Metabolism
8 Molecular Sequences and the Early History of Life
10 Paradigm Lost
11 Contemporary Issues in Mitochondrial Origins and Evolution
12 On the Origin and Evolution of Plastids
13 The Karyomastigont Model of Eukaryosis
The Microtubule Cytoskeleton and the Origin of Eukaryotes
15 Heritable Microorganisms and Reproductive Parasitism
9 Fulfilling Darwins Dream
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Acad Academy of Sciences Actinobacteria amino acid anaerobic analysis antibiotic Archaea Archaebacteria bacteria bacterial phyla Bacteriology bacterium biochemical biologists branching C.R. Woese cellular Chlamydiae chloroplasts chromosome classification coli common ancestor complex cyanobacteria dinoflagellates diversity domains encoded endosymbiont enzymes eocyte eubacteria Eucarya eukaryotic eukaryotic cell evidence evolutionary evolved FtsZ function genetic Genome Sequence groups homologs Horizontal Gene Transfer host hydrogenosomes hypothesis indels indicate infected Journal lateral gene transfer lineages Margulis markers membrane metabolism methanogens microbial Microbiology microorganisms microtubules mitochondrial genome Molecular Biology molecules monophyletic morphological motility mtDNA mutation National Academy Natl Nature Niel nuclear nucleus organelles organismal organisms Origin of Eukaryotes parasites phenotype phylogenetic trees phylogeny plants plastids primary prokaryotes proteins Proteobacteria protists relationships ribosomal RNA rRNA rRNA sequences rRNA tree Sciences USA signature species Spirochetes SSU rRNA structure studies subunit symbionts symbiosis synthetase tion translation tubulin Universal Tree W.F. Doolittle Wolbachia